Low FODMAP

    Low FODMAP Chocolate Chip Cookies — Soft, Chewy & IBS-Friendly

    S
    Sarah Mitchell, RDN
    June 30, 2026

    Total Time

    22 min

    Servings

    18

    Prep

    10 min

    Cook

    12 min

    Share:
    Low FODMAP Chocolate Chip Cookies — Soft, Chewy & IBS-Friendly — low FODMAP dessert ready to serve
    Sarah Mitchell, RDN
    Written & reviewed by Sarah Mitchell, RDN• Monash FODMAP Trained Dietitian
    Published June 30, 2026

    Soft, chewy gluten-free Low FODMAP chocolate chip cookies with crisp edges and gooey dark chocolate centres. Monash-aligned portions, ready in 25 minutes, perfect for an IBS-friendly treat.

    Ingredients

    • 1 ¾ cups (220 g) gluten-free plain flour blend (with xanthan gum)
    • ½ tsp baking soda
    • ½ tsp salt
    • ¾ cup (170 g) unsalted butter, softened (or lactose-free butter)
    • ¾ cup (165 g) light brown sugar
    • ¼ cup (50 g) caster (white) sugar
    • 1 large egg + 1 yolk, room temperature
    • 2 tsp vanilla extract

    Why these cookies are IBS-friendly

    Standard chocolate chip cookies hide three classic IBS triggers: wheat flour (fructans), milk chocolate (lactose), and honey-sweetened brands. This recipe swaps in a gluten-free flour blend, 70% dark chocolate (Low FODMAP up to 30 g per serve), and lactose-free butter so each cookie stays inside Monash University's tested thresholds.

    Looking for more sweet ideas? Browse our Low FODMAP Desserts Hub for 15+ tested treats.

    Step-by-step instructions

    1. Preheat the oven to 175 °C (350 °F). Line 2 baking sheets with parchment paper.
    2. Whisk dry ingredients — flour, baking soda, and salt — in a bowl. Set aside.
    3. Cream butter + sugars with an electric mixer for 2 minutes, until light and fluffy.
    4. Beat in egg, yolk, and vanilla for 1 minute until glossy.
    5. Add the dry mix in 2 additions on low speed. Stop as soon as no flour streaks remain.
    6. Fold in chocolate chips (and nuts, if using).
    7. Scoop 2-tbsp portions (≈40 g each) onto the trays, 5 cm apart. Makes 18 cookies.
    8. Bake 10–12 minutes — pull when edges are set but centres still look slightly underdone.
    9. Cool on the tray 5 minutes, then transfer to a wire rack. They firm up as they cool.

    Serving size & FODMAP safety

    1 serve = 1 cookie (≈40 g). Stay inside these tested portions:

    Ingredient Low FODMAP serve Per cookie (÷18)
    Gluten-free flour unrestricted ≈12 g
    Dark chocolate (70%) 30 g ≈10 g
    Butter unlimited (no FODMAPs) ≈9 g
    Brown sugar 1 tbsp per serve ≈9 g
    Walnuts 30 g ≈2 g

    Two cookies in one sitting are still within range, but doubling up with milk, fruit, or other dessert items can stack FODMAPs — see why in our FODMAP Stacking Guide. Unsure about a swap? Check it with the Low FODMAP Food Checker.

    High → Low FODMAP swaps

    Skip (High FODMAP) Use instead (Low FODMAP)
    Wheat flour Gluten-free plain flour blend
    Milk chocolate chips 70% dark chocolate chips (≤30 g/serve)
    Honey Maple syrup (rarely needed here)
    Buttermilk Lactose-free milk + lemon juice
    Cashews / pistachios Walnuts or pecans
    Sweetened condensed milk Skip — too high in lactose
    Coconut flour GF flour blend (high oligos in coconut flour)

    Variations (still Low FODMAP)

    • Double chocolate: swap 2 tbsp flour for cocoa powder.
    • Sea-salt finish: sprinkle flaky salt on top right after baking.
    • Brown-butter version: brown the butter first, cool, then proceed.
    • Dairy-free: use vegan/lactose-free butter and dairy-free dark chocolate chips.

    Storage & freezing

    • Room temperature: airtight container, 4 days.
    • Refrigerate dough balls: up to 3 days, then bake fresh.
    • Freeze dough balls: 3 months. Bake from frozen, add 2 minutes.

    Common mistakes to avoid

    1. Overbaking — centres should look soft when you pull them. They set on the tray.
    2. Skipping the extra yolk — it's what makes them chewy without gluten.
    3. Using milk chocolate — lactose pushes them over the threshold.
    4. Eating 4+ in one sitting — even Low FODMAP cookies stack sugar polyols when piled with other desserts.
    5. Using almond flour as the base — high in GOS at the quantity needed for cookies.

    Sources & further reading

    Medical disclaimer: This recipe is for informational purposes only and is not a substitute for personalised advice from a FODMAP-trained dietitian.

    FODMAP Notes

    Per cookie (≈40 g): gluten-free flour ≈12 g, 70% dark chocolate ≈10 g (well under 30 g Monash threshold), brown sugar ≈9 g, optional walnuts ≈2 g. Lactose-free butter keeps each cookie within Monash thresholds.

    Storage Tips

    Store in an airtight container in the refrigerator for up to 3-4 days. This recipe freezes well for up to 3 months.

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